IL_8PPL_061

3D structure

PDB id

8PPL (explore in PDB, NAKB, or RNA 3D Hub)

Description

MERS-CoV Nsp1 bound to the human 43S pre-initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

G(PSU)U*AGC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PPL_061 not in the Motif Atlas

Geometric match to IL_2O3X_001

Geometric discrepancy: 0.1255

The information below is about IL_2O3X_001

Detailed Annotation

Stack and bulge

Broad Annotation

Stack and bulge

Motif group

IL_53541.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

8PPL|1|A2|G|1176
8PPL|1|A2|PSU|1177
8PPL|1|A2|U|1178
*
8PPL|1|A2|A|1183
8PPL|1|A2|G|1184
8PPL|1|A2|C|1185

Current chains

Chain A2

18S rRNA

Nearby chains

Chain Ah

60S ribosomal protein L41