IL_8PPL_076

3D structure

PDB id

8PPL (explore in PDB, NAKB, or RNA 3D Hub)

Description

MERS-CoV Nsp1 bound to the human 43S pre-initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

CUG*CG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PPL_076 not in the Motif Atlas

Homologous match to IL_8C3A_460

Geometric discrepancy: 0.2429

The information below is about IL_8C3A_460

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_58310.2

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

24

Unit IDs

8PPL|1|A2|C|1363
8PPL|1|A2|U|1364
8PPL|1|A2|G|1365
*
8PPL|1|A2|C|1374
8PPL|1|A2|G|1375

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AR

40S ribosomal protein S17

Chain Aa

40S ribosomal protein S26