IL_8PPL_079

3D structure

PDB id

8PPL (explore in PDB, NAKB, or RNA 3D Hub)

Description

MERS-CoV Nsp1 bound to the human 43S pre-initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

ACUA*U(OMU)CU

Length

8 nucleotides

Bulged bases

8PPL|1|A2|C|1403, 8PPL|1|A2|U|1404

QA status

Modified nucleotides: OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PPL_079 not in the Motif Atlas

Geometric match to IL_4V88_456

Geometric discrepancy: 0.1156

The information below is about IL_4V88_456

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_76458.1

Basepair signature

cWW-cSH-L-cWW

Number of instances in this motif group

2

Unit IDs

8PPL|1|A2|A|1402
8PPL|1|A2|C|1403
8PPL|1|A2|U|1404
8PPL|1|A2|A|1405
*
8PPL|1|A2|U|1441
8PPL|1|A2|OMU|1442
8PPL|1|A2|C|1443
8PPL|1|A2|U|1444

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AD

40S ribosomal protein S3

Chain AQ

40S ribosomal protein S16

Chain AU

40S ribosomal protein S20