IL_8PPL_080

3D structure

PDB id

8PPL (explore in PDB, NAKB, or RNA 3D Hub)

Description

MERS-CoV Nsp1 bound to the human 43S pre-initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

UA*UCCCCCA

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PPL_080 not in the Motif Atlas

Geometric match to IL_1R3E_002

Geometric discrepancy: 0.2331

The information below is about IL_1R3E_002

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_05670.1

Basepair signature

cWW-cWW

Number of instances in this motif group

9

Unit IDs

8PPL|1|A2|U|1408
8PPL|1|A2|A|1409
*
8PPL|1|A2|U|1432
8PPL|1|A2|C|1433
8PPL|1|A2|C|1434
8PPL|1|A2|C|1435
8PPL|1|A2|C|1436
8PPL|1|A2|C|1437
8PPL|1|A2|A|1438

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AQ

40S ribosomal protein S16

Chain AU

40S ribosomal protein S20