IL_8PPL_085

3D structure

PDB id

8PPL (explore in PDB, NAKB, or RNA 3D Hub)

Description

MERS-CoV Nsp1 bound to the human 43S pre-initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

UAC*GCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PPL_085 not in the Motif Atlas

Homologous match to IL_8C3A_468

Geometric discrepancy: 0.1933

The information below is about IL_8C3A_468

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_10289.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

237

Unit IDs

8PPL|1|A2|U|1560
8PPL|1|A2|A|1561
8PPL|1|A2|C|1562
*
8PPL|1|A2|G|1573
8PPL|1|A2|C|1574
8PPL|1|A2|G|1575

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AT

Small ribosomal subunit protein eS19