IL_8PPL_087

3D structure

PDB id

8PPL (explore in PDB, NAKB, or RNA 3D Hub)

Description

MERS-CoV Nsp1 bound to the human 43S pre-initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

8PPL|1|A2|C|1701, 8PPL|1|A2|A|1835

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PPL_087 not in the Motif Atlas

Homologous match to IL_4V88_463

Geometric discrepancy: 0.0925

The information below is about IL_4V88_463

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

5

Unit IDs

8PPL|1|A2|C|1700
8PPL|1|A2|C|1701
8PPL|1|A2|G|1702
*
8PPL|1|A2|C|1833
8PPL|1|A2|A|1834
8PPL|1|A2|A|1835
8PPL|1|A2|G|1836

Current chains

Chain A2

18S rRNA

Nearby chains

Chain Aa

40S ribosomal protein S26

Chain Iw

Transfer RNA; tRNA