IL_8PPL_088

3D structure

PDB id

8PPL (explore in PDB, NAKB, or RNA 3D Hub)

Description

MERS-CoV Nsp1 bound to the human 43S pre-initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

G(OMC)CC*GUA(6MZ)C

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMC, 6MZ

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PPL_088 not in the Motif Atlas

Homologous match to IL_8C3A_471

Geometric discrepancy: 0.0859

The information below is about IL_8C3A_471

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65718.2

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

6

Unit IDs

8PPL|1|A2|G|1702
8PPL|1|A2|OMC|1703
8PPL|1|A2|C|1704
8PPL|1|A2|C|1705
*
8PPL|1|A2|G|1829
8PPL|1|A2|U|1830
8PPL|1|A2|A|1831
8PPL|1|A2|6MZ|1832
8PPL|1|A2|C|1833

Current chains

Chain A2

18S rRNA

Nearby chains

Chain Ah

60S ribosomal protein L41

Chain Ip

Eukaryotic translation initiation factor 1

Chain Iq

Eukaryotic translation initiation factor 1A, X-chromosomal