IL_8PPL_098

3D structure

PDB id

8PPL (explore in PDB, NAKB, or RNA 3D Hub)

Description

MERS-CoV Nsp1 bound to the human 43S pre-initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

UGAG*CGAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PPL_098 not in the Motif Atlas

Homologous match to IL_4V88_471

Geometric discrepancy: 0.1108

The information below is about IL_4V88_471

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

8PPL|1|A2|U|1733
8PPL|1|A2|G|1734
8PPL|1|A2|A|1735
8PPL|1|A2|G|1736
*
8PPL|1|A2|C|1798
8PPL|1|A2|G|1799
8PPL|1|A2|A|1800
8PPL|1|A2|A|1801

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AG

40S ribosomal protein S6

Chain AI

40S ribosomal protein S8