IL_8PPL_100

3D structure

PDB id

8PPL (explore in PDB, NAKB, or RNA 3D Hub)

Description

MERS-CoV Nsp1 bound to the human 43S pre-initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

CGGAU*AGAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PPL_100 not in the Motif Atlas

Homologous match to IL_8C3A_480

Geometric discrepancy: 0.1924

The information below is about IL_8C3A_480

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_50730.1

Basepair signature

cWW-tSH-tSH-tHS-cWW

Number of instances in this motif group

17

Unit IDs

8PPL|1|A2|C|1742
8PPL|1|A2|G|1743
8PPL|1|A2|G|1744
8PPL|1|A2|A|1745
8PPL|1|A2|U|1746
*
8PPL|1|A2|A|1788
8PPL|1|A2|G|1789
8PPL|1|A2|A|1790
8PPL|1|A2|A|1791
8PPL|1|A2|G|1792

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AG

40S ribosomal protein S6

Chain AI

40S ribosomal protein S8