IL_8PPL_104

3D structure

PDB id

8PPL (explore in PDB, NAKB, or RNA 3D Hub)

Description

MERS-CoV Nsp1 bound to the human 43S pre-initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

GGUC*GGCC

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PPL_104 not in the Motif Atlas

Geometric match to IL_1D4R_001

Geometric discrepancy: 0.2189

The information below is about IL_1D4R_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

8PPL|1|A2|G|1759
8PPL|1|A2|G|1760
8PPL|1|A2|U|1761
8PPL|1|A2|C|1762
*
8PPL|1|A2|G|1770
8PPL|1|A2|G|1771
8PPL|1|A2|C|1772
8PPL|1|A2|C|1773

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AG

40S ribosomal protein S6