IL_8PPL_110

3D structure

PDB id

8PPL (explore in PDB, NAKB, or RNA 3D Hub)

Description

MERS-CoV Nsp1 bound to the human 43S pre-initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

GGAUAAC*GCUAA(OMU)A(OMC)

Length

15 nucleotides

Bulged bases

8PPL|1|A2|OMU|172

QA status

Modified nucleotides: OMU, OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PPL_110 not in the Motif Atlas

Homologous match to IL_8C3A_402

Geometric discrepancy: 0.0991

The information below is about IL_8C3A_402

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_80604.4

Basepair signature

cWW-L-R-tWH-tWH-tHW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

8PPL|1|A2|G|145
8PPL|1|A2|G|146
8PPL|1|A2|A|147
8PPL|1|A2|U|148
8PPL|1|A2|A|149
8PPL|1|A2|A|150
8PPL|1|A2|C|151
*
8PPL|1|A2|G|167
8PPL|1|A2|C|168
8PPL|1|A2|U|169
8PPL|1|A2|A|170
8PPL|1|A2|A|171
8PPL|1|A2|OMU|172
8PPL|1|A2|A|173
8PPL|1|A2|OMC|174

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AG

40S ribosomal protein S6

Chain AY

40S ribosomal protein S24