IL_8PPL_116

3D structure

PDB id

8PPL (explore in PDB, NAKB, or RNA 3D Hub)

Description

MERS-CoV Nsp1 bound to the human 43S pre-initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

GGCG*CCC

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PPL_116 not in the Motif Atlas

Geometric match to IL_8C3A_419

Geometric discrepancy: 0.2685

The information below is about IL_8C3A_419

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_47767.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

7

Unit IDs

8PPL|1|A2|G|751
8PPL|1|A2|G|752
8PPL|1|A2|C|753
8PPL|1|A2|G|754
*
8PPL|1|A2|C|790
8PPL|1|A2|C|791
8PPL|1|A2|C|792

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AG

40S ribosomal protein S6