IL_8PPL_122

3D structure

PDB id

8PPL (explore in PDB, NAKB, or RNA 3D Hub)

Description

MERS-CoV Nsp1 bound to the human 43S pre-initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

GC(OMC)*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PPL_122 not in the Motif Atlas

Geometric match to IL_4P3T_005

Geometric discrepancy: 0.1259

The information below is about IL_4P3T_005

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_10289.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

237

Unit IDs

8PPL|1|A2|G|1270
8PPL|1|A2|C|1271
8PPL|1|A2|OMC|1272
*
8PPL|1|A2|G|1510
8PPL|1|A2|U|1511
8PPL|1|A2|C|1512

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AK

40S ribosomal protein S10

Chain AP

40S ribosomal protein S15

Chain Ad

40S ribosomal protein S29

Chain Af

Ubiquitin-40S ribosomal protein S27a