IL_8PPL_123
3D structure
- PDB id
- 8PPL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- MERS-CoV Nsp1 bound to the human 43S pre-initiation complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.65 Å
Loop
- Sequence
- GACAGGA(OMU)UG*CUCGAUUC
- Length
- 18 nucleotides
- Bulged bases
- 8PPL|1|A2|G|1285
- QA status
- Modified nucleotides: OMU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8PPL_123 not in the Motif Atlas
- Homologous match to IL_8P9A_470
- Geometric discrepancy: 0.2752
- The information below is about IL_8P9A_470
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_28304.1
- Basepair signature
- cWW-R-L-R-L-R-L-R-L-L-L-cWW-cWW
- Number of instances in this motif group
- 1
Unit IDs
8PPL|1|A2|G|1281
8PPL|1|A2|A|1282
8PPL|1|A2|C|1283
8PPL|1|A2|A|1284
8PPL|1|A2|G|1285
8PPL|1|A2|G|1286
8PPL|1|A2|A|1287
8PPL|1|A2|OMU|1288
8PPL|1|A2|U|1289
8PPL|1|A2|G|1290
*
8PPL|1|A2|C|1309
8PPL|1|A2|U|1310
8PPL|1|A2|C|1311
8PPL|1|A2|G|1312
8PPL|1|A2|A|1313
8PPL|1|A2|U|1314
8PPL|1|A2|U|1315
8PPL|1|A2|C|1316
Current chains
- Chain A2
- 18S rRNA
Nearby chains
- Chain AK
- 40S ribosomal protein S10
- Chain AM
- 40S ribosomal protein S12
- Chain Ad
- 40S ribosomal protein S29
- Chain Af
- Ubiquitin-40S ribosomal protein S27a
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