IL_8PPL_125

3D structure

PDB id

8PPL (explore in PDB, NAKB, or RNA 3D Hub)

Description

MERS-CoV Nsp1 bound to the human 43S pre-initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

G(OMU)G*CC

Length

5 nucleotides

Bulged bases

8PPL|1|A2|OMU|1326

QA status

Modified nucleotides: OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PPL_125 not in the Motif Atlas

Homologous match to IL_8C3A_455

Geometric discrepancy: 0.1521

The information below is about IL_8C3A_455

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

94

Unit IDs

8PPL|1|A2|G|1325
8PPL|1|A2|OMU|1326
8PPL|1|A2|G|1327
*
8PPL|1|A2|C|1502
8PPL|1|A2|C|1503

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AK

40S ribosomal protein S10

Chain Ad

40S ribosomal protein S29

Chain Af

Ubiquitin-40S ribosomal protein S27a