IL_8PV1_135

3D structure

PDB id

8PV1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum pre-60S State 6 - pre-5S rotation - L1 intermediate - composite structure

Experimental method

ELECTRON MICROSCOPY

Resolution

2.56 Å

Loop

Sequence

AGAG*CGAU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PV1_135 not in the Motif Atlas

Geometric match to IL_4V9F_100

Geometric discrepancy: 0.2014

The information below is about IL_4V9F_100

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.3

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

47

Unit IDs

8PV1|1|C1|A|3283
8PV1|1|C1|G|3284
8PV1|1|C1|A|3285
8PV1|1|C1|G|3286
*
8PV1|1|C1|C|3301
8PV1|1|C1|G|3302
8PV1|1|C1|A|3303
8PV1|1|C1|U|3304

Current chains

Chain C1

26S rRNA

Nearby chains

Chain Cb

Zinc finger domain-containing protein

Chain LR

Ribosomal protein L19