IL_8PV2_046
3D structure
- PDB id
- 8PV2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Chaetomium thermophilum pre-60S State 10 - pre-5S rotation with Ytm1-Erb1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.63 Å
Loop
- Sequence
- UGCCGGAG*CA
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8PV2_046 not in the Motif Atlas
- Geometric match to IL_4V9F_038
- Geometric discrepancy: 0.1149
- The information below is about IL_4V9F_038
- Detailed Annotation
- SSU/LSU pseudoknot
- Broad Annotation
- No text annotation
- Motif group
- IL_11411.1
- Basepair signature
- cWW-L-cWW-L-L-R-cSH
- Number of instances in this motif group
- 12
Unit IDs
8PV2|1|C1|U|1156
8PV2|1|C1|G|1157
8PV2|1|C1|C|1158
8PV2|1|C1|C|1159
8PV2|1|C1|G|1160
8PV2|1|C1|G|1161
8PV2|1|C1|A|1162
8PV2|1|C1|G|1163
*
8PV2|1|C1|C|1308
8PV2|1|C1|A|1309
Current chains
- Chain C1
- 26S rRNA
Nearby chains
- Chain LF
- 60S ribosomal protein l7-like protein
- Chain LO
- 60S ribosomal protein L16-like protein
- Chain LS
- 60S ribosomal protein L20
- Chain Lf
- 60S ribosomal protein l33-like protein
Coloring options: