IL_8PV2_078
3D structure
- PDB id
- 8PV2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Chaetomium thermophilum pre-60S State 10 - pre-5S rotation with Ytm1-Erb1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.63 Å
Loop
- Sequence
- AGUCGG*CUGU
- Length
- 10 nucleotides
- Bulged bases
- 8PV2|1|C1|G|2298
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8PV2_078 not in the Motif Atlas
- Geometric match to IL_4V9F_062
- Geometric discrepancy: 0.109
- The information below is about IL_4V9F_062
- Detailed Annotation
- Intercalated tWH
- Broad Annotation
- Intercalated tWH
- Motif group
- IL_28217.1
- Basepair signature
- cWW-L-R-L-cWW-L-L
- Number of instances in this motif group
- 10
Unit IDs
8PV2|1|C1|A|1881
8PV2|1|C1|G|1882
8PV2|1|C1|U|1883
8PV2|1|C1|C|1884
8PV2|1|C1|G|1885
8PV2|1|C1|G|1886
*
8PV2|1|C1|C|2296
8PV2|1|C1|U|2297
8PV2|1|C1|G|2298
8PV2|1|C1|U|2299
Current chains
- Chain C1
- 26S rRNA
Nearby chains
- Chain Cb
- Zinc finger domain-containing protein
- Chain Cd
- Nucleolar GTP-binding protein 2
- Chain LB
- 60S ribosomal protein L3-like protein
- Chain LV
- 60S ribosomal protein l23-like protein
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