IL_8PV2_089

3D structure

PDB id

8PV2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum pre-60S State 10 - pre-5S rotation with Ytm1-Erb1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

GAAUG*CGC

Length

8 nucleotides

Bulged bases

8PV2|1|C1|U|2172

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PV2_089 not in the Motif Atlas

Homologous match to IL_5TBW_087

Geometric discrepancy: 0.4276

The information below is about IL_5TBW_087

Detailed Annotation

Major groove platform with extra pair

Broad Annotation

Major groove platform

Motif group

IL_63450.5

Basepair signature

cWW-cHS-cWW-cWW-cWW

Number of instances in this motif group

7

Unit IDs

8PV2|1|C1|G|2169
8PV2|1|C1|A|2170
8PV2|1|C1|A|2171
8PV2|1|C1|U|2172
8PV2|1|C1|G|2173
*
8PV2|1|C1|C|2198
8PV2|1|C1|G|2199
8PV2|1|C1|C|2200

Current chains

Chain C1

26S rRNA

Nearby chains

Chain Cd

Nucleolar GTP-binding protein 2