IL_8PV2_090

3D structure

PDB id

8PV2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum pre-60S State 10 - pre-5S rotation with Ytm1-Erb1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

UCAAAGU*AACCAAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PV2_090 not in the Motif Atlas

Homologous match to IL_8C3A_093

Geometric discrepancy: 0.1554

The information below is about IL_8C3A_093

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_36973.8

Basepair signature

cWW-tSH-L-R-L-R-L-R-cWW-cWW

Number of instances in this motif group

3

Unit IDs

8PV2|1|C1|U|2174
8PV2|1|C1|C|2175
8PV2|1|C1|A|2176
8PV2|1|C1|A|2177
8PV2|1|C1|A|2178
8PV2|1|C1|G|2179
8PV2|1|C1|U|2180
*
8PV2|1|C1|A|2191
8PV2|1|C1|A|2192
8PV2|1|C1|C|2193
8PV2|1|C1|C|2194
8PV2|1|C1|A|2195
8PV2|1|C1|A|2196
8PV2|1|C1|G|2197

Current chains

Chain C1

26S rRNA

Nearby chains

Chain Cd

Nucleolar GTP-binding protein 2

Chain Li

60S ribosomal protein L36