IL_8PV3_083

3D structure

PDB id

8PV3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum pre-60S State 9 - pre-5S rotation - immature H68/H69 - composite structure

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

AUC*G(A2M)U

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PV3_083 not in the Motif Atlas

Geometric match to IL_353D_001

Geometric discrepancy: 0.1782

The information below is about IL_353D_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_86319.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

269

Unit IDs

8PV3|1|C1|A|2089
8PV3|1|C1|U|2090
8PV3|1|C1|C|2091
*
8PV3|1|C1|G|2288
8PV3|1|C1|A2M|2289
8PV3|1|C1|U|2290

Current chains

Chain C1

26S rRNA

Nearby chains

Chain Cd

Nucleolar GTP-binding protein 2