IL_8PV3_086

3D structure

PDB id

8PV3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum pre-60S State 9 - pre-5S rotation - immature H68/H69 - composite structure

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GCGG*UAC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PV3_086 not in the Motif Atlas

Homologous match to IL_8C3A_096

Geometric discrepancy: 0.0741

The information below is about IL_8C3A_096

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_63450.5

Basepair signature

cWW-cHS-cWW-cWW-cWW

Number of instances in this motif group

7

Unit IDs

8PV3|1|C1|G|2354
8PV3|1|C1|C|2355
8PV3|1|C1|G|2356
8PV3|1|C1|G|2357
*
8PV3|1|C1|U|2945
8PV3|1|C1|A|2946
8PV3|1|C1|C|2947

Current chains

Chain C1

26S rRNA

Nearby chains

Chain LB

60S ribosomal protein L3-like protein

Chain LO

60S ribosomal protein L16-like protein

Chain LP

60S ribosomal protein l17-like protein