IL_8PV3_111

3D structure

PDB id

8PV3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum pre-60S State 9 - pre-5S rotation - immature H68/H69 - composite structure

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CAAU*AGAACG

Length

10 nucleotides

Bulged bases

8PV3|1|C1|A|3100, 8PV3|1|C1|C|3101

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PV3_111 not in the Motif Atlas

Homologous match to IL_5TBW_114

Geometric discrepancy: 0.0736

The information below is about IL_5TBW_114

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

8PV3|1|C1|C|2962
8PV3|1|C1|A|2963
8PV3|1|C1|A|2964
8PV3|1|C1|U|2965
*
8PV3|1|C1|A|3097
8PV3|1|C1|G|3098
8PV3|1|C1|A|3099
8PV3|1|C1|A|3100
8PV3|1|C1|C|3101
8PV3|1|C1|G|3102

Current chains

Chain C1

26S rRNA

Nearby chains

Chain CO

DUF2423 domain-containing protein

Chain LB

60S ribosomal protein L3-like protein

Chain LO

60S ribosomal protein L16-like protein