IL_8PV3_148
3D structure
- PDB id
- 8PV3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Chaetomium thermophilum pre-60S State 9 - pre-5S rotation - immature H68/H69 - composite structure
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- GUAGU(A2M)(OMG)*CGAAAC
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: A2M, OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8PV3_148 not in the Motif Atlas
- Homologous match to IL_8P9A_289
- Geometric discrepancy: 0.0796
- The information below is about IL_8P9A_289
- Detailed Annotation
- 7x6 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_02666.1
- Basepair signature
- cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 17
Unit IDs
8PV3|1|C1|G|1427
8PV3|1|C1|U|1428
8PV3|1|C1|A|1429
8PV3|1|C1|G|1430
8PV3|1|C1|U|1431
8PV3|1|C1|A2M|1432
8PV3|1|C1|OMG|1433
*
8PV3|1|C1|C|2317
8PV3|1|C1|G|2318
8PV3|1|C1|A|2319
8PV3|1|C1|A|2320
8PV3|1|C1|A|2321
8PV3|1|C1|C|2322
Current chains
- Chain C1
- 26S rRNA
Nearby chains
- Chain C2
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain CH
- Nucleolar GTP-binding protein 1
- Chain LC
- 60S ribosomal protein L4-like protein
- Chain LP
- 60S ribosomal protein l17-like protein
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