IL_8PV4_017
3D structure
- PDB id
- 8PV4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Chaetomium thermophilum pre-60S State 2 - pre-5S rotation with Rix1 complex - composite structure
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GUGAAAU*ACGGAUC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8PV4_017 not in the Motif Atlas
- Homologous match to IL_8C3A_016
- Geometric discrepancy: 0.0711
- The information below is about IL_8C3A_016
- Detailed Annotation
- Triple sheared with non-canonical cWW
- Broad Annotation
- Triple sheared
- Motif group
- IL_66414.7
- Basepair signature
- cWW-L-R-tSH-tSH-tHS-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
8PV4|1|C1|G|397
8PV4|1|C1|U|398
8PV4|1|C1|G|399
8PV4|1|C1|A|400
8PV4|1|C1|A|401
8PV4|1|C1|A|402
8PV4|1|C1|U|403
*
8PV4|1|C2|A|13
8PV4|1|C2|C|14
8PV4|1|C2|G|15
8PV4|1|C2|G|16
8PV4|1|C2|A|17
8PV4|1|C2|U|18
8PV4|1|C2|C|19
Current chains
- Chain C1
- 26S rRNA
- Chain C2
- 5.8S rRNA
Nearby chains
- Chain CH
- Nucleolar GTP-binding protein 1
- Chain LC
- 60S ribosomal protein L4-like protein
- Chain LP
- 60S ribosomal protein l17-like protein
- Chain Le
- 60S ribosomal protein L32-like protein
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