IL_8PV4_020

3D structure

PDB id

8PV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum pre-60S State 2 - pre-5S rotation with Rix1 complex - composite structure

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AUCAUC*GUGCACU

Length

13 nucleotides

Bulged bases

8PV4|1|C1|U|447, 8PV4|1|C1|C|471

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8PV4|1|C1|A|446
8PV4|1|C1|U|447
8PV4|1|C1|C|448
8PV4|1|C1|A|449
8PV4|1|C1|U|450
8PV4|1|C1|C|451
*
8PV4|1|C1|G|466
8PV4|1|C1|U|467
8PV4|1|C1|G|468
8PV4|1|C1|C|469
8PV4|1|C1|A|470
8PV4|1|C1|C|471
8PV4|1|C1|U|472

Current chains

Chain C1

26S rRNA

Nearby chains

Chain LE

60S ribosomal protein L6

Chain LF

60S ribosomal protein l7-like protein

Chain Lq

Putative 60S ribosomal protein