IL_8PV4_021
3D structure
- PDB id
- 8PV4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Chaetomium thermophilum pre-60S State 2 - pre-5S rotation with Rix1 complex - composite structure
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GGAUAAAGG*UGUAAUAC
- Length
- 17 nucleotides
- Bulged bases
- 8PV4|1|C1|A|510, 8PV4|1|C1|U|511, 8PV4|1|C1|U|560
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8PV4_021 not in the Motif Atlas
- Homologous match to IL_5TBW_019
- Geometric discrepancy: 0.355
- The information below is about IL_5TBW_019
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_74024.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-L-R-cWW
- Number of instances in this motif group
- 2
Unit IDs
8PV4|1|C1|G|508
8PV4|1|C1|G|509
8PV4|1|C1|A|510
8PV4|1|C1|U|511
8PV4|1|C1|A|512
8PV4|1|C1|A|513
8PV4|1|C1|A|514
8PV4|1|C1|G|515
8PV4|1|C1|G|516
*
8PV4|1|C1|U|558
8PV4|1|C1|G|559
8PV4|1|C1|U|560
8PV4|1|C1|A|561
8PV4|1|C1|A|562
8PV4|1|C1|U|563
8PV4|1|C1|A|564
8PV4|1|C1|C|565
Current chains
- Chain C1
- 26S rRNA
Nearby chains
- Chain LC
- 60S ribosomal protein L4-like protein
- Chain LF
- 60S ribosomal protein l7-like protein
- Chain LM
- 60S ribosomal protein L14-like protein
- Chain LS
- 60S ribosomal protein L20
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