IL_8PV4_027

3D structure

PDB id

8PV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum pre-60S State 2 - pre-5S rotation with Rix1 complex - composite structure

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CC*GAG

Length

5 nucleotides

Bulged bases

8PV4|1|C1|A|762

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PV4_027 not in the Motif Atlas

Geometric match to IL_7A0S_012

Geometric discrepancy: 0.3135

The information below is about IL_7A0S_012

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

160

Unit IDs

8PV4|1|C1|C|734
8PV4|1|C1|C|735
*
8PV4|1|C1|G|761
8PV4|1|C1|A|762
8PV4|1|C1|G|763

Current chains

Chain C1

26S rRNA

Nearby chains

Chain LQ

Ribosomal protein L18-like protein

Chain La

60S ribosomal protein L28-like protein