IL_8PV4_029

3D structure

PDB id

8PV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum pre-60S State 2 - pre-5S rotation with Rix1 complex - composite structure

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUGAUG*CGGAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PV4_029 not in the Motif Atlas

Homologous match to IL_5TBW_026

Geometric discrepancy: 0.1793

The information below is about IL_5TBW_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

8PV4|1|C1|C|740
8PV4|1|C1|U|741
8PV4|1|C1|G|742
8PV4|1|C1|A|743
8PV4|1|C1|U|744
8PV4|1|C1|G|745
*
8PV4|1|C1|C|750
8PV4|1|C1|G|751
8PV4|1|C1|G|752
8PV4|1|C1|A|753
8PV4|1|C1|U|754
8PV4|1|C1|G|755

Current chains

Chain C1

26S rRNA

Nearby chains

Chain LL

60S ribosomal protein L13

Chain La

60S ribosomal protein L28-like protein