IL_8PV4_033

3D structure

PDB id

8PV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum pre-60S State 2 - pre-5S rotation with Rix1 complex - composite structure

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGUU*AUC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PV4_033 not in the Motif Atlas

Homologous match to IL_8C3A_034

Geometric discrepancy: 0.0838

The information below is about IL_8C3A_034

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

No text annotation

Motif group

IL_63959.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

18

Unit IDs

8PV4|1|C1|G|851
8PV4|1|C1|G|852
8PV4|1|C1|U|853
8PV4|1|C1|U|854
*
8PV4|1|C1|A|870
8PV4|1|C1|U|871
8PV4|1|C1|C|872

Current chains

Chain C1

26S rRNA

Nearby chains

Chain Lj

Ribosomal protein L37