IL_8PV4_034

3D structure

PDB id

8PV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum pre-60S State 2 - pre-5S rotation with Rix1 complex - composite structure

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUG*CG

Length

5 nucleotides

Bulged bases

8PV4|1|C1|U|856

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PV4_034 not in the Motif Atlas

Geometric match to IL_7RQB_080

Geometric discrepancy: 0.2565

The information below is about IL_7RQB_080

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.16

Basepair signature

cWW-L-cWW

Number of instances in this motif group

116

Unit IDs

8PV4|1|C1|C|855
8PV4|1|C1|U|856
8PV4|1|C1|G|857
*
8PV4|1|C1|C|868
8PV4|1|C1|G|869

Current chains

Chain C1

26S rRNA

Nearby chains

Chain CH

Nucleolar GTP-binding protein 1

Chain LB

60S ribosomal protein L3-like protein

Chain Lj

Ribosomal protein L37