IL_8PV4_036

3D structure

PDB id

8PV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum pre-60S State 2 - pre-5S rotation with Rix1 complex - composite structure

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CA*UAG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PV4_036 not in the Motif Atlas

Homologous match to IL_8C3A_038

Geometric discrepancy: 0.3536

The information below is about IL_8C3A_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05035.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

38

Unit IDs

8PV4|1|C1|C|951
8PV4|1|C1|A|952
*
8PV4|1|C1|U|1094
8PV4|1|C1|A|1095
8PV4|1|C1|G|1096

Current chains

Chain C1

26S rRNA

Nearby chains

Chain LQ

Ribosomal protein L18-like protein

Chain LT

60S ribosomal protein l21-like protein

Chain La

60S ribosomal protein L28-like protein