IL_8PV4_038

3D structure

PDB id

8PV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum pre-60S State 2 - pre-5S rotation with Rix1 complex - composite structure

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AGU*AU

Length

5 nucleotides

Bulged bases

8PV4|1|C1|G|966

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PV4_038 not in the Motif Atlas

Homologous match to IL_8C3A_040

Geometric discrepancy: 0.0939

The information below is about IL_8C3A_040

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

49

Unit IDs

8PV4|1|C1|A|965
8PV4|1|C1|G|966
8PV4|1|C1|U|967
*
8PV4|1|C1|A|1082
8PV4|1|C1|U|1083

Current chains

Chain C1

26S rRNA

Nearby chains

Chain LF

60S ribosomal protein l7-like protein

Chain LQ

Ribosomal protein L18-like protein

Chain LT

60S ribosomal protein l21-like protein