IL_8PV4_040

3D structure

PDB id

8PV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum pre-60S State 2 - pre-5S rotation with Rix1 complex - composite structure

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AA*UUU

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PV4_040 not in the Motif Atlas

Homologous match to IL_8C3A_042

Geometric discrepancy: 0.3163

The information below is about IL_8C3A_042

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_18604.1

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

46

Unit IDs

8PV4|1|C1|A|979
8PV4|1|C1|A|980
*
8PV4|1|C1|U|1033
8PV4|1|C1|U|1034
8PV4|1|C1|U|1035

Current chains

Chain C1

26S rRNA

Nearby chains

Chain CL

Putative GTP binding protein

Chain LS

60S ribosomal protein L20