IL_8PV4_042

3D structure

PDB id

8PV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum pre-60S State 2 - pre-5S rotation with Rix1 complex - composite structure

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UAC*GA

Length

5 nucleotides

Bulged bases

8PV4|1|C1|A|1058

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PV4_042 not in the Motif Atlas

Homologous match to IL_8C3A_048

Geometric discrepancy: 0.4386

The information below is about IL_8C3A_048

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

49

Unit IDs

8PV4|1|C1|U|1057
8PV4|1|C1|A|1058
8PV4|1|C1|C|1059
*
8PV4|1|C1|G|1066
8PV4|1|C1|A|1067

Current chains

Chain C1

26S rRNA

Nearby chains

Chain LT

60S ribosomal protein l21-like protein