IL_8PV4_052
3D structure
- PDB id
- 8PV4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Chaetomium thermophilum pre-60S State 2 - pre-5S rotation with Rix1 complex - composite structure
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GACUG*CUC
- Length
- 8 nucleotides
- Bulged bases
- 8PV4|1|C1|A|1246
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8PV4_052 not in the Motif Atlas
- Homologous match to IL_8C3A_059
- Geometric discrepancy: 0.1847
- The information below is about IL_8C3A_059
- Detailed Annotation
- Major groove platform with extra cWW
- Broad Annotation
- No text annotation
- Motif group
- IL_63959.1
- Basepair signature
- cWW-cSH-cWW-cWW
- Number of instances in this motif group
- 18
Unit IDs
8PV4|1|C1|G|1245
8PV4|1|C1|A|1246
8PV4|1|C1|C|1247
8PV4|1|C1|U|1248
8PV4|1|C1|G|1249
*
8PV4|1|C1|C|1258
8PV4|1|C1|U|1259
8PV4|1|C1|C|1260
Current chains
- Chain C1
- 26S rRNA
Nearby chains
- Chain CF
- Large ribosomal subunit protein uL10
- Chain CK
- Ribosome biogenesis protein NSA2 homolog
- Chain Cz
- rRNA-processing protein
- Chain LK
- 60S ribosomal protein L12-like protein
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