IL_8PV4_056

3D structure

PDB id

8PV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum pre-60S State 2 - pre-5S rotation with Rix1 complex - composite structure

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UAG*CG

Length

5 nucleotides

Bulged bases

8PV4|1|C1|A|1382

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PV4_056 not in the Motif Atlas

Homologous match to IL_5TBW_060

Geometric discrepancy: 0.5252

The information below is about IL_5TBW_060

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

8PV4|1|C1|U|1381
8PV4|1|C1|A|1382
8PV4|1|C1|G|1383
*
8PV4|1|C1|C|1394
8PV4|1|C1|G|1395

Current chains

Chain C1

26S rRNA

Nearby chains

Chain C2

5.8S ribosomal RNA; 5.8S rRNA

Chain Le

60S ribosomal protein L32-like protein