IL_8PV4_064

3D structure

PDB id

8PV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum pre-60S State 2 - pre-5S rotation with Rix1 complex - composite structure

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GG*UUC

Length

5 nucleotides

Bulged bases

8PV4|1|C1|U|1799

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PV4_064 not in the Motif Atlas

Geometric match to IL_7KVT_002

Geometric discrepancy: 0.3313

The information below is about IL_7KVT_002

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

147

Unit IDs

8PV4|1|C1|G|1604
8PV4|1|C1|G|1605
*
8PV4|1|C1|U|1798
8PV4|1|C1|U|1799
8PV4|1|C1|C|1800

Current chains

Chain C1

26S rRNA

Nearby chains

Chain CJ

Pescadillo homolog

Chain Ce

Ribosome biogenesis protein NOP53