IL_8PV4_076
3D structure
- PDB id
- 8PV4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Chaetomium thermophilum pre-60S State 2 - pre-5S rotation with Rix1 complex - composite structure
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GGGAA*U(OMC)C
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: OMC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8PV4_076 not in the Motif Atlas
- Geometric match to IL_7RQB_093
- Geometric discrepancy: 0.3666
- The information below is about IL_7RQB_093
- Detailed Annotation
- Major groove platform with extra pair
- Broad Annotation
- Major groove platform
- Motif group
- IL_63450.2
- Basepair signature
- cWW-cWW-cSH-cWW
- Number of instances in this motif group
- 8
Unit IDs
8PV4|1|C1|G|1877
8PV4|1|C1|G|1878
8PV4|1|C1|G|1879
8PV4|1|C1|A|1880
8PV4|1|C1|A|1881
*
8PV4|1|C1|U|2299
8PV4|1|C1|OMC|2300
8PV4|1|C1|C|2301
Current chains
- Chain C1
- 26S rRNA
Nearby chains
- Chain CQ
- Ribosome biogenesis protein RLP24
- Chain Cb
- Zinc finger domain-containing protein
- Chain LB
- 60S ribosomal protein L3-like protein
- Chain LV
- 60S ribosomal protein l23-like protein
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