IL_8PV4_078

3D structure

PDB id

8PV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum pre-60S State 2 - pre-5S rotation with Rix1 complex - composite structure

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAU*A(OMU)U

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PV4_078 not in the Motif Atlas

Geometric match to IL_5TBW_110

Geometric discrepancy: 0.1891

The information below is about IL_5TBW_110

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

8PV4|1|C1|G|1894
8PV4|1|C1|A|1895
8PV4|1|C1|U|1896
*
8PV4|1|C1|A|1916
8PV4|1|C1|OMU|1917
8PV4|1|C1|U|1918

Current chains

Chain C1

26S rRNA

Nearby chains

Chain Cb

Zinc finger domain-containing protein

Chain Cd

Nucleolar GTP-binding protein 2

Chain LR

Ribosomal protein L19