IL_8PV4_095

3D structure

PDB id

8PV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum pre-60S State 2 - pre-5S rotation with Rix1 complex - composite structure

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUU*AC

Length

5 nucleotides

Bulged bases

8PV4|1|C1|U|2373

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PV4_095 not in the Motif Atlas

Geometric match to IL_1S03_005

Geometric discrepancy: 0.3173

The information below is about IL_1S03_005

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

147

Unit IDs

8PV4|1|C1|G|2372
8PV4|1|C1|U|2373
8PV4|1|C1|U|2374
*
8PV4|1|C1|A|2770
8PV4|1|C1|C|2771

Current chains

Chain C1

26S rRNA

Nearby chains

Chain CH

Nucleolar GTP-binding protein 1

Chain Cd

Nucleolar GTP-binding protein 2

Chain LC

60S ribosomal protein L4-like protein