IL_8PV4_099

3D structure

PDB id

8PV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum pre-60S State 2 - pre-5S rotation with Rix1 complex - composite structure

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CA*UUG

Length

5 nucleotides

Bulged bases

8PV4|1|C1|U|2465

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PV4_099 not in the Motif Atlas

Geometric match to IL_1S03_005

Geometric discrepancy: 0.3332

The information below is about IL_1S03_005

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

147

Unit IDs

8PV4|1|C1|C|2407
8PV4|1|C1|A|2408
*
8PV4|1|C1|U|2464
8PV4|1|C1|U|2465
8PV4|1|C1|G|2466

Current chains

Chain C1

26S rRNA

Nearby chains

Chain LG

60S ribosomal protein L8

Chain Li

60S ribosomal protein L36