IL_8PV4_100
3D structure
- PDB id
- 8PV4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Chaetomium thermophilum pre-60S State 2 - pre-5S rotation with Rix1 complex - composite structure
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GGUGUAGAAUAG*UAC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8PV4_100 not in the Motif Atlas
- Geometric match to IL_5UNE_001
- Geometric discrepancy: 0.2357
- The information below is about IL_5UNE_001
- Detailed Annotation
- Isolated non-canonical cWW contact
- Broad Annotation
- No text annotation
- Motif group
- IL_87720.1
- Basepair signature
- cWW-L-R-cWW
- Number of instances in this motif group
- 8
Unit IDs
8PV4|1|C1|G|2414
8PV4|1|C1|G|2415
8PV4|1|C1|U|2416
8PV4|1|C1|G|2417
8PV4|1|C1|U|2418
8PV4|1|C1|A|2419
8PV4|1|C1|G|2420
8PV4|1|C1|A|2421
8PV4|1|C1|A|2422
8PV4|1|C1|U|2423
8PV4|1|C1|A|2424
8PV4|1|C1|G|2425
*
8PV4|1|C1|U|2456
8PV4|1|C1|A|2457
8PV4|1|C1|C|2458
Current chains
- Chain C1
- 26S rRNA
Nearby chains
- Chain CR
- Protein SDA1
- Chain CW
- Pre-rRNA-processing protein RIX1
- Chain Lr
- Ribosomal protein
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