IL_8PV4_105
3D structure
- PDB id
- 8PV4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Chaetomium thermophilum pre-60S State 2 - pre-5S rotation with Rix1 complex - composite structure
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GAU*AC
- Length
- 5 nucleotides
- Bulged bases
- 8PV4|1|C1|A|2680
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8PV4_105 not in the Motif Atlas
- Geometric match to IL_4V9F_098
- Geometric discrepancy: 0.2973
- The information below is about IL_4V9F_098
- Detailed Annotation
- Single bulged A
- Broad Annotation
- No text annotation
- Motif group
- IL_14190.2
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 160
Unit IDs
8PV4|1|C1|G|2679
8PV4|1|C1|A|2680
8PV4|1|C1|U|2681
*
8PV4|1|C1|A|2695
8PV4|1|C1|C|2696
Current chains
- Chain C1
- 26S rRNA
Nearby chains
- Chain CK
- Ribosome biogenesis protein NSA2 homolog
- Chain Cd
- Nucleolar GTP-binding protein 2
- Chain Cf
- Ribosome production factor 2 homolog
- Chain Cg
- Ribosome biogenesis regulatory protein
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