IL_8PV4_117

3D structure

PDB id

8PV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum pre-60S State 2 - pre-5S rotation with Rix1 complex - composite structure

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

A(OMC)C*GGU

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PV4_117 not in the Motif Atlas

Homologous match to IL_8C3A_121

Geometric discrepancy: 0.2309

The information below is about IL_8C3A_121

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_52767.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

28

Unit IDs

8PV4|1|C1|A|2917
8PV4|1|C1|OMC|2918
8PV4|1|C1|C|2919
*
8PV4|1|C1|G|2931
8PV4|1|C1|G|2932
8PV4|1|C1|U|2933

Current chains

Chain C1

26S rRNA

Nearby chains

Chain CK

Ribosome biogenesis protein NSA2 homolog

Chain Cd

Nucleolar GTP-binding protein 2

Chain LA

60S ribosomal protein L2-like protein