IL_8PV4_124

3D structure

PDB id

8PV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum pre-60S State 2 - pre-5S rotation with Rix1 complex - composite structure

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UU*AGUG

Length

6 nucleotides

Bulged bases

8PV4|1|C1|G|3036, 8PV4|1|C1|U|3037

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PV4_124 not in the Motif Atlas

Homologous match to IL_5TBW_119

Geometric discrepancy: 0.239

The information below is about IL_5TBW_119

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_24807.2

Basepair signature

cWW-cWW

Number of instances in this motif group

16

Unit IDs

8PV4|1|C1|U|3021
8PV4|1|C1|U|3022
*
8PV4|1|C1|A|3035
8PV4|1|C1|G|3036
8PV4|1|C1|U|3037
8PV4|1|C1|G|3038

Current chains

Chain C1

26S rRNA

Nearby chains

Chain LR

Ribosomal protein L19

Chain Ld

Putative 60S ribosomal protein