IL_8PV4_144

3D structure

PDB id

8PV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum pre-60S State 2 - pre-5S rotation with Rix1 complex - composite structure

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CG*CAG

Length

5 nucleotides

Bulged bases

8PV4|1|C3|A|138

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PV4_144 not in the Motif Atlas

Geometric match to IL_1CSL_002

Geometric discrepancy: 0.2907

The information below is about IL_1CSL_002

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

160

Unit IDs

8PV4|1|C3|C|68
8PV4|1|C3|G|69
*
8PV4|1|C3|C|137
8PV4|1|C3|A|138
8PV4|1|C3|G|139

Current chains

Chain C3

ITS2

Nearby chains

Chain CI

Putative RNA-binding protein

Chain CM

60S ribosomal protein l7-like protein