IL_8PV4_158

3D structure

PDB id

8PV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum pre-60S State 2 - pre-5S rotation with Rix1 complex - composite structure

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGAUC*GUGCCAG

Length

12 nucleotides

Bulged bases

8PV4|1|C1|U|2722, 8PV4|1|C1|G|2755, 8PV4|1|C1|C|2756

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8PV4|1|C1|C|2719
8PV4|1|C1|G|2720
8PV4|1|C1|A|2721
8PV4|1|C1|U|2722
8PV4|1|C1|C|2723
*
8PV4|1|C1|G|2753
8PV4|1|C1|U|2754
8PV4|1|C1|G|2755
8PV4|1|C1|C|2756
8PV4|1|C1|C|2757
8PV4|1|C1|A|2758
8PV4|1|C1|G|2759

Current chains

Chain C1

26S rRNA

Nearby chains

Chain Cd

Nucleolar GTP-binding protein 2

Chain Cg

Ribosome biogenesis regulatory protein