IL_8PV5_057
3D structure
- PDB id
- 8PV5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Chaetomium thermophilum pre-60S State 8 - pre-5S rotation without Foot - composite structure
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.86 Å
Loop
- Sequence
- GUAGU(A2M)(OMG)C*GCGAAAC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: A2M, OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8PV5_057 not in the Motif Atlas
- Geometric match to IL_4V9F_012
- Geometric discrepancy: 0.2762
- The information below is about IL_4V9F_012
- Detailed Annotation
- 8x7 Sarcin-Ricin with CC bifurcated pair; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_59724.1
- Basepair signature
- cWW-L-R-L-R-cSH-tWH-tHS-R-L-cWW
- Number of instances in this motif group
- 1
Unit IDs
8PV5|1|C1|G|1427
8PV5|1|C1|U|1428
8PV5|1|C1|A|1429
8PV5|1|C1|G|1430
8PV5|1|C1|U|1431
8PV5|1|C1|A2M|1432
8PV5|1|C1|OMG|1433
8PV5|1|C1|C|1434
*
8PV5|1|C1|G|2316
8PV5|1|C1|C|2317
8PV5|1|C1|G|2318
8PV5|1|C1|A|2319
8PV5|1|C1|A|2320
8PV5|1|C1|A|2321
8PV5|1|C1|C|2322
Current chains
- Chain C1
- 26S rRNA
Nearby chains
- Chain C2
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain CH
- Nucleolar GTP-binding protein 1
- Chain LC
- 60S ribosomal protein L4-like protein
- Chain LP
- 60S ribosomal protein l17-like protein
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