IL_8PV5_142

3D structure

PDB id

8PV5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum pre-60S State 8 - pre-5S rotation without Foot - composite structure

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

GUUAGUAG*CGAAUCC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PV5_142 not in the Motif Atlas

Homologous match to IL_5TBW_377

Geometric discrepancy: 0.2759

The information below is about IL_5TBW_377

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.8

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

8PV5|1|C4|G|72
8PV5|1|C4|U|73
8PV5|1|C4|U|74
8PV5|1|C4|A|75
8PV5|1|C4|G|76
8PV5|1|C4|U|77
8PV5|1|C4|A|78
8PV5|1|C4|G|79
*
8PV5|1|C4|C|99
8PV5|1|C4|G|100
8PV5|1|C4|A|101
8PV5|1|C4|A|102
8PV5|1|C4|U|103
8PV5|1|C4|C|104
8PV5|1|C4|C|105

Current chains

Chain C4

5S rRNA

Nearby chains

Chain Cf

Ribosome production factor 2 homolog